Research workbench
Structure of in silico modelled artificial maquette-3 protein
Analyse Structure of in silico modelled artificial maquette-3 protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Z0C
- Type
- protein
- Length
- 783 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maquette-3
- Ligands
- K
- Pockets
- 5 · best druggability 0.73
Structure
x-ray diffraction · 4 distinct chains · 91% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maquette-3 | protein | 199 | 92% helix, 0% strand | — |
| B | Maquette-3 | protein | 196 | 88% helix, 0% strand | — |
| C | Maquette-3 | protein | 198 | 93% helix, 0% strand | — |
| D | Maquette-3 | protein | 190 | 92% helix, 0% strand | — |
Ligands and binding sites
- K · Potassium ion · metal · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 803 | 0.73 | 0.78 | 82 | empty |
| 2 | 228 | 0.56 | 0.79 | 41 | empty |
| 3 | 76 | 0.38 | 0.78 | 15 | empty |
| 4 | 55 | 0.37 | 0.79 | 12 | empty |
| 5 | 61 | 0.37 | 0.79 | 14 | empty |
Interfaces
4 interfaces between chains.
- A–B · 1595 Ų buried · 28 hydrogen bonds · protein-protein
- C–D · 1540 Ų buried · 31 hydrogen bonds · protein-protein
- B–C · 584 Ų buried · 8 hydrogen bonds · protein-protein
- B–D · 18 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6Z0C · Structure of in silico modelled artificial Maquette-3 protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6Z0C · PDBe 6Z0C
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