Research workbench
Structure of chloroflexus aggregans flavin based fluorescent protein (cagfbfp) Q148K variant with morpholine
Analyse Structure of chloroflexus aggregans flavin based fluorescent protein (cagfbfp)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6YX4
- Type
- protein
- Length
- 206 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Multi-sensor hybrid histidine kinase
- UniProt
- B8GAY9
- Ligands
- FMN, 6LR
- Pockets
- 3 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Multi-sensor hybrid histidine kinase | protein | 103 | 26% helix, 37% strand | B8GAY9 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
- 6LR · morpholine · ligand · 2 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 203 | 0.75 | 0.90 | 31 | FMN, 6LR |
| 2 | 199 | 0.74 | 0.90 | 31 | FMN, 6LR |
| 3 | 121 | 0.41 | 0.76 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 765 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6YX4 · Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148K… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8GAY9
- Elsewhere: RCSB PDB 6YX4 · PDBe 6YX4 · UniProt B8GAY9
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