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Structure of chloroflexus aggregans flavin based fluorescent protein (cagfbfp) Q148H variant (space group C2)
Analyse Structure of chloroflexus aggregans flavin based fluorescent protein (cagfbfp)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6YWR
- Type
- protein
- Length
- 211 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Multi-sensor hybrid histidine kinase
- UniProt
- B8GAY9
- Ligands
- FMN, SO4
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Multi-sensor hybrid histidine kinase | protein | 107 | 26% helix, 36% strand | B8GAY9 |
| A | Multi-sensor hybrid histidine kinase | protein | 104 | 27% helix, 37% strand | B8GAY9 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains B, A
- SO4 · Sulfate ion · ion · 4 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 184 | 0.74 | 0.90 | 21 | FMN |
| 2 | 170 | 0.73 | 0.90 | 22 | FMN |
| 3 | 129 | 0.41 | 0.75 | 23 | empty |
Interfaces
1 interface between chains.
- B–A · 766 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6YWR · Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148H… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8GAY9
- Elsewhere: RCSB PDB 6YWR · PDBe 6YWR · UniProt B8GAY9
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