Research workbench
Structure of the flagellar motab stator complex from clostridium sporogenes
Analyse Structure of the flagellar motab stator complex from clostridium sporogenes in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6YSF
- Type
- protein
- Length
- 1,327 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chemotaxis motb protein; Chemotaxis mota protein
- UniProt
- A0A1V9IL35, A0A2X3BQ48
- Pockets
- 20 · best druggability 0.85
Structure
electron microscopy · 4 distinct chains · 71% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chemotaxis motb protein | protein | 29 | 59% helix, 0% strand | A0A1V9IL35 |
| B | Chemotaxis motb protein | protein | 33 | 76% helix, 0% strand | A0A1V9IL35 |
| E, C, D, G | Chemotaxis mota protein | protein | 252 | 71% helix, 0% strand | A0A2X3BQ48 |
| F | Chemotaxis mota protein | protein | 257 | 73% helix, 0% strand | A0A2X3BQ48 |
Pockets
20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 758 | 0.85 | 0.88 | 98 | empty |
| 2 | 271 | 0.75 | 0.88 | 48 | empty |
| 3 | 731 | 0.74 | 0.79 | 73 | empty |
| 4 | 838 | 0.74 | 0.78 | 73 | empty |
| 5 | 226 | 0.73 | 0.88 | 27 | empty |
Interfaces
15 interfaces between chains.
- E–F · 2131 Ų buried · 11 hydrogen bonds · protein-protein
- C–D · 2109 Ų buried · 12 hydrogen bonds · protein-protein
- C–G · 2046 Ų buried · 6 hydrogen bonds · protein-protein
- F–G · 1370 Ų buried · 4 hydrogen bonds · protein-protein
- E–D · 1268 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 6YSF · Structure of the flagellar MotAB stator complex from Clostridium sporogenes · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1V9IL35
- Every structure of UniProt A0A2X3BQ48
- Elsewhere: RCSB PDB 6YSF · PDBe 6YSF · UniProt A0A1V9IL35 · UniProt A0A2X3BQ48
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