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Solution NMR structure of the oligomerization domain of respiratory syncytial virus phosphoprotein

Analyse Solution NMR structure of the oligomerization domain of respiratory syncytial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6YP5
Type: protein
Length: 156 residues
Chains: 4
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphoprotein
UniProt: G8FRA5
Pockets: 1 · best druggability 0.72

Structure

solution nmr · 1 distinct chain · 72% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Phosphoprotein	protein	39	72% helix, 0% strand	G8FRA5

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	173	0.72	0.90	28	empty

Interfaces

6 interfaces between chains.

B–C · 789 Å² buried · 7 hydrogen bonds · protein-protein
A–D · 788 Å² buried · 7 hydrogen bonds · protein-protein
C–D · 786 Å² buried · 7 hydrogen bonds · protein-protein
A–B · 786 Å² buried · 7 hydrogen bonds · protein-protein
B–D · 89 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

6YP5 · Solution NMR structure of the oligomerization domain of respiratory syncytial virus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G8FRA5
Elsewhere: RCSB PDB 6YP5 · PDBe 6YP5 · UniProt G8FRA5

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