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Crystal structure of yhbo from escherichia COLI

Analyse Crystal structure of yhbo from escherichia COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1OI4
Type: protein
Length: 364 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein yhbo
UniProt: P45470
Pockets: 2 · best druggability 0.31

Structure

x-ray diffraction · 2 distinct chains · 36% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein yhbo	protein	191	35% helix, 21% strand	P45470
B	Hypothetical protein yhbo	protein	173	38% helix, 23% strand	P45470

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	76	0.31	0.74	20	empty
2	62	0.30	0.75	15	empty

Interfaces

1 interface between chains.

A–B · 757 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

1OI4 · Crystal Structure of yhbO from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
P45470 · AlphaFold monomer V2.0 prediction for PROTEIN/NUCLEIC acid deglycase 2 (P45470) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P45470
Elsewhere: RCSB PDB 1OI4 · PDBe 1OI4 · UniProt P45470

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