Research workbench

MTURQUOISE2 sg P212121 - directional optical properties of fluorescent proteins

Analyse MTURQUOISE2 sg P212121 - directional optical properties of fluorescent proteins in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6YLN
Type: protein
Length: 225 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Egfp
UniProt: A0A1V0D974
Ligands: SWG, K
Pockets: 2 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Egfp	protein	225	11% helix, 54% strand	A0A1V0D974

Ligands and binding sites

SWG · 2-[(4Z)-2-[(1R)-1-amino-2-hydroxy-ethyl]-4-(1H-indol-3-ylmethylidene)-5-oxo-imidazol-1-yl]ethanoic acid · ligand · chains A
K · Potassium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	80	0.75	0.98	25	SWG
2	63	0.33	0.77	13	empty

Modifications

Observed in the structure: 2 covalent (covalent ligand).

Compared structures

6YLN · mTurquoise2 SG P212121 - Directional optical properties of fluorescent proteins · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1V0D974
Elsewhere: RCSB PDB 6YLN · PDBe 6YLN · UniProt A0A1V0D974

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