Research workbench
Structure of a protonation mimic of unplugged C. jejuni motab
Analyse Structure of a protonation mimic of unplugged C. jejuni motab in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6YKR
- Type
- protein
- Length
- 1,326 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chemotaxis protein mota, putative; Chemotaxis protein motb, putative
- UniProt
- A0A0H3PAV1, A0A0H3PBX6
- Pockets
- 14 · best druggability 0.75
Structure
electron microscopy · 3 distinct chains · 73% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | Chemotaxis protein mota, putative | protein | 255 | 70% helix, 0% strand | A0A0H3PAV1 |
| F | Chemotaxis protein motb, putative | protein | 25 | 88% helix, 0% strand | A0A0H3PBX6 |
| G | Chemotaxis protein motb, putative | protein | 26 | 81% helix, 0% strand | A0A0H3PBX6 |
Pockets
14 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 709 | 0.75 | 0.80 | 76 | empty |
| 2 | 807 | 0.74 | 0.79 | 86 | empty |
| 3 | 795 | 0.74 | 0.79 | 82 | empty |
| 4 | 540 | 0.74 | 0.81 | 76 | empty |
| 5 | 848 | 0.73 | 0.78 | 91 | empty |
Interfaces
15 interfaces between chains.
- C–D · 2030 Ų buried · 15 hydrogen bonds · protein-protein
- D–E · 1992 Ų buried · 17 hydrogen bonds · protein-protein
- A–B · 1972 Ų buried · 16 hydrogen bonds · protein-protein
- A–E · 1972 Ų buried · 17 hydrogen bonds · protein-protein
- B–C · 1936 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 6YKR · Structure of a protonation mimic of unplugged C. jejuni MotAB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3PAV1
- Every structure of UniProt A0A0H3PBX6
- Elsewhere: RCSB PDB 6YKR · PDBe 6YKR · UniProt A0A0H3PAV1 · UniProt A0A0H3PBX6
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