Research workbench
Structure of C. jejuni motab
Analyse Structure of C. jejuni motab in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6YKM
- Type
- protein
- Length
- 1,357 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chemotaxis protein mota, putative; Chemotaxis protein motb, putative
- UniProt
- A0A0H3PAV1, A0A0H3PBX6
- Pockets
- 20 · best druggability 0.79
Structure
electron microscopy · 2 distinct chains · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | Chemotaxis protein mota, putative | protein | 255 | 73% helix, 0% strand | A0A0H3PAV1 |
| F, G | Chemotaxis protein motb, putative | protein | 41 | 71% helix, 0% strand | A0A0H3PBX6 |
Pockets
20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 723 | 0.79 | 0.83 | 101 | empty |
| 2 | 964 | 0.75 | 0.78 | 92 | empty |
| 3 | 682 | 0.74 | 0.80 | 69 | empty |
| 4 | 743 | 0.74 | 0.79 | 76 | empty |
| 5 | 671 | 0.73 | 0.80 | 65 | empty |
Interfaces
16 interfaces between chains.
- D–E · 1956 Ų buried · 21 hydrogen bonds · protein-protein
- A–B · 1932 Ų buried · 12 hydrogen bonds · protein-protein
- C–D · 1922 Ų buried · 10 hydrogen bonds · protein-protein
- A–E · 1851 Ų buried · 11 hydrogen bonds · protein-protein
- B–C · 1805 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 6YKM · Structure of C. jejuni MotAB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3PAV1
- Every structure of UniProt A0A0H3PBX6
- Elsewhere: RCSB PDB 6YKM · PDBe 6YKM · UniProt A0A0H3PAV1 · UniProt A0A0H3PBX6
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