Research workbench
Structure of cyri-B (FAM49B) from rhincodon typus (selenomethionine derivative)
Analyse Structure of cyri-B (FAM49B) from rhincodon typus (selenomethionine derivative) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6YJJ
- Type
- protein
- Length
- 320 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyri-B (FAM49B)
- Pockets
- 4 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyri-B (FAM49B) | protein | 320 | 72% helix, 0% strand | — |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.46 | 0.84 | 15 | empty |
| 2 | 55 | 0.39 | 0.81 | 14 | empty |
| 3 | 80 | 0.35 | 0.76 | 14 | empty |
| 4 | 55 | 0.29 | 0.75 | 12 | empty |
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 6YJJ · Structure of CYRI-B (FAM49B) from Rhincodon typus (selenomethionine derivative) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6YJJ · PDBe 6YJJ
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