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Co-crystals in the P212121 space group, of a beta-cyclodextrin spacered by triazole heptyl from alpha-D-mannose, with fimh lectin at 2.00 a resolution.
Analyse Co-crystals in the P212121 space group, of a beta-cyclodextrin spacered by… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6YHW
- Type
- protein
- Length
- 316 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fimh
- UniProt
- Q6JKW3
- Ligands
- TA5, HP6, GLC, MAN
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Fimh | protein | 158 | 6% helix, 53% strand | Q6JKW3 |
Ligands and binding sites
- TA5 · 2H-1,2,3-triazol-4-ylmethanol · ligand · 2 copies · chains A, B
- HP6 · Heptane · ligand · 2 copies · chains A, B
- GLC · alpha-D-glucopyranose · sugar · 14 copies
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6YHW · Co-crystals in the P212121 space group, of a beta-cyclodextrin spacered by triazole… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6JKW3
- Elsewhere: RCSB PDB 6YHW · PDBe 6YHW · UniProt Q6JKW3
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