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Crystal structure of the DNA binding domain of arabidopsis thaliana auxin response factor 1 (ATARF1) in complex with high affinity DNA

Analyse Crystal structure of the DNA binding domain of arabidopsis thaliana auxin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6YCQ
Type: protein + DNA
Length: 732 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q8L7G0
Ligands: NA, CL

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	347	—	Q8L7G0
B	—	protein	343	—	Q8L7G0
C	—	dna	21	—	—
D	—	dna	21	—	—

Ligands and binding sites

NA · Sodium ion · metal · chains B
CL · Chloride ion · ion · 12 copies · chains A, C, B, D
FMT · Formic acid · additive · 5 copies · chains A, B
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 3 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6YCQ · Crystal structure of the DNA binding domain of Arabidopsis thaliana Auxin Response Factor… · the same entry in another collection · chain A against A, TM-score 1.00
Q8L7G0 · AlphaFold monomer V2.0 prediction for auxin response factor 1 (Q8L7G0) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8L7G0
Elsewhere: RCSB PDB 6YCQ · PDBe 6YCQ · UniProt Q8L7G0

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