Research workbench
Crystal structure of whirlin PDZ3_C-ter in complex with taperin internal PDZ binding motif peptide
Analyse Crystal structure of whirlin PDZ3_C-ter in complex with taperin internal PDZ… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Y9Q
- Type
- protein
- Length
- 105 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Whirlin; Taperin
- UniProt
- Q80VW5, Q4KMQ1
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Whirlin | protein | 94 | 18% helix, 31% strand | Q80VW5 |
| D | Taperin | protein | 11 | 27% helix, 27% strand | Q4KMQ1 |
Interfaces
1 interface between chains.
- B–D · 599 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 6Y9Q · Crystal structure of Whirlin PDZ3_C-ter in complex with Taperin internal PDZ binding… · the same entry in another collection · chain D against D, TM-score 1.00
- Q80VW5 · AlphaFold monomer V2.0 prediction for whirlin (Q80VW5) · a predicted model of the same protein · chain B against A, TM-score 0.94
- Q4KMQ1 · AlphaFold monomer V2.0 prediction for taperin (Q4KMQ1) · a predicted model of the same protein · chain D against A, TM-score 0.47
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q80VW5
- Every structure of UniProt Q4KMQ1
- Elsewhere: RCSB PDB 6Y9Q · PDBe 6Y9Q · UniProt Q80VW5 · UniProt Q4KMQ1
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