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Crystal structure of whirlin PDZ3_C-ter in complex with cask internal PDZ binding motif peptide

Analyse Crystal structure of whirlin PDZ3_C-ter in complex with cask internal PDZ… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6Y9O
Type: protein
Length: 104 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Whirlin; Peripheral plasma membrane protein cask
EC: 2.7.11.1
UniProt: Q80VW5, O70589

Structure

x-ray diffraction · 2 distinct chains · 17% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Whirlin	protein	97	19% helix, 30% strand	Q80VW5
C	Peripheral plasma membrane protein cask (EC 2.7.11.1)	protein	7	0% helix, 57% strand	O70589

Interfaces

1 interface between chains.

A–C · 536 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

6Y9O · Crystal structure of Whirlin PDZ3_C-ter in complex with CASK internal PDZ binding motif… · the same entry in another collection · chain A against A, TM-score 1.00
Q80VW5 · AlphaFold monomer V2.0 prediction for whirlin (Q80VW5) · a predicted model of the same protein · chain A against A, TM-score 0.93
O70589 · AlphaFold monomer V2.0 prediction for peripheral plasma membrane protein cask (O70589) · a predicted model of the same protein · chain C against A, TM-score 0.76

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q80VW5
Every structure of UniProt O70589
Elsewhere: RCSB PDB 6Y9O · PDBe 6Y9O · UniProt Q80VW5 · UniProt O70589

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