Research workbench
The crystal structure of pgip (polygalacturonase inhibiting protein), a leucine rich repeat protein involved in plant defense
Analyse The crystal structure of pgip (polygalacturonase inhibiting protein), a leucine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1OGQ
- Type
- protein
- Length
- 313 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polygalacturonase inhibiting protein
- UniProt
- P58822
- Ligands
- NAG
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polygalacturonase inhibiting protein | protein | 313 | 20% helix, 26% strand | P58822 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 1OGQ · The crystal structure of PGIP (polygalacturonase inhibiting protein), a leucine rich… · the same entry in another collection · chain A against A, TM-score 1.00
- P58822 · AlphaFold monomer V2.0 prediction for polygalacturonase inhibitor 2 (P58822) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P58822
- Elsewhere: RCSB PDB 1OGQ · PDBe 1OGQ · UniProt P58822
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