Research workbench
Cryo-EM structure of a phenuiviridae L protein
Analyse Cryo-EM structure of a phenuiviridae L protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Y6K
- Type
- protein
- Length
- 1,299 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA-dependent RNA polymerase
- UniProt
- F1BV96
- Ligands
- MG
- Pockets
- 20 · best druggability 0.76
Structure
electron microscopy · 1 distinct chain · 35% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA-dependent RNA polymerase | protein | 1299 | 35% helix, 10% strand | F1BV96 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 255 | 0.76 | 0.89 | 36 | empty |
| 2 | 681 | 0.75 | 0.81 | 56 | empty |
| 3 | 1104 | 0.74 | 0.77 | 103 | MG |
| 4 | 319 | 0.70 | 0.84 | 38 | empty |
| 5 | 409 | 0.70 | 0.82 | 49 | empty |
Compared structures
- 6Y6K · Cryo-EM structure of a Phenuiviridae L protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F1BV96
- Elsewhere: RCSB PDB 6Y6K · PDBe 6Y6K · UniProt F1BV96
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