Research workbench
Lipopolysaccharide outer core galactosyltransferase waab apo form
Analyse Lipopolysaccharide outer core galactosyltransferase waab apo form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Y6G
- Type
- protein
- Length
- 357 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipopolysaccharide 1,6-galactosyltransferase
- EC
- 2.4.1.-
- UniProt
- Q06994
- Pockets
- 3 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipopolysaccharide 1,6-galactosyltransferase (EC 2.4.1.-) | protein | 357 | 42% helix, 19% strand | Q06994 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 353 | 0.59 | 0.77 | 45 | empty |
| 2 | 113 | 0.44 | 0.77 | 19 | empty |
| 3 | 52 | 0.27 | 0.74 | 15 | empty |
Compared structures
- 6Y6G · lipopolysaccharide outer core galactosyltransferase WaaB apo form · the same entry in another collection · chain A against A, TM-score 1.00
- Q06994 · AlphaFold monomer V2.0 prediction for lipopolysaccharide 1,6-galactosyltransferase… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06994
- Elsewhere: RCSB PDB 6Y6G · PDBe 6Y6G · UniProt Q06994
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