Research workbench

DEX49A from penicillium minioluteum

Analyse DEX49A from penicillium minioluteum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1OGM
Type: protein
Length: 572 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dextranase
EC: 3.2.1.11
UniProt: P48845
Pockets: 6 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	Dextranase (EC 3.2.1.11)	protein	572	3% helix, 42% strand	P48845

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.56	0.86	17	empty
2	173	0.43	0.74	24	empty
3	55	0.36	0.79	20	empty
4	69	0.34	0.77	16	empty
5	56	0.32	0.77	16	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

1OGM · Dex49A from Penicillium minioluteum · the same entry in another collection · chain X against X, TM-score 1.00
P48845 · AlphaFold monomer V2.0 prediction for dextranase (P48845) · a predicted model of the same protein · chain X against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P48845
Elsewhere: RCSB PDB 1OGM · PDBe 1OGM · UniProt P48845

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