Research workbench
The crystal structure of native trypanosoma cruzi dutpase
Analyse The crystal structure of native trypanosoma cruzi dutpase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1OGL
- Type
- protein
- Length
- 246 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Deoxyuridine triphosphatase
- EC
- 3.6.1.23
- UniProt
- O15923
- Pockets
- 5 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 64% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Deoxyuridine triphosphatase (EC 3.6.1.23) | protein | 246 | 64% helix, 0% strand | O15923 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.46 | 0.79 | 19 | empty |
| 2 | 85 | 0.38 | 0.77 | 15 | empty |
| 3 | 67 | 0.32 | 0.75 | 18 | empty |
| 4 | 70 | 0.28 | 0.72 | 16 | empty |
| 5 | 56 | 0.25 | 0.72 | 13 | empty |
Compared structures
- 1OGL · The crystal structure of native Trypanosoma cruzi dUTPase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O15923
- Elsewhere: RCSB PDB 1OGL · PDBe 1OGL · UniProt O15923
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