Research workbench
Cytoplasmic domain of tssl from acinetobacter baumannii
Analyse Cytoplasmic domain of tssl from acinetobacter baumannii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Y4R
- Type
- protein
- Length
- 960 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dotu family type IV/VI secretion system protein
- UniProt
- A0A429M4M7
- Pockets
- 8 · best druggability 0.75
Structure
x-ray diffraction · 4 distinct chains · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D | Dotu family type IV/VI secretion system protein | protein | 160 | 75% helix, 0% strand | A0A429M4M7 |
| B | Dotu family type IV/VI secretion system protein | protein | 161 | 76% helix, 0% strand | A0A429M4M7 |
| E | Dotu family type IV/VI secretion system protein | protein | 159 | 79% helix, 0% strand | A0A429M4M7 |
| F | Dotu family type IV/VI secretion system protein | protein | 160 | 77% helix, 0% strand | A0A429M4M7 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1044 | 0.75 | 0.78 | 98 | empty |
| 2 | 845 | 0.74 | 0.78 | 70 | empty |
| 3 | 445 | 0.65 | 0.78 | 45 | empty |
| 4 | 146 | 0.48 | 0.78 | 21 | empty |
| 5 | 166 | 0.45 | 0.75 | 22 | empty |
Interfaces
7 interfaces between chains.
- A–B · 548 Ų buried · 7 hydrogen bonds · protein-protein
- D–E · 504 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 405 Ų buried · 9 hydrogen bonds · protein-protein
- A–E · 378 Ų buried · 7 hydrogen bonds · protein-protein
- C–D · 264 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6Y4R · Cytoplasmic domain of TssL from Acinetobacter baumannii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A429M4M7
- Elsewhere: RCSB PDB 6Y4R · PDBe 6Y4R · UniProt A0A429M4M7
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