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RNA dodecamer with a 6-hydrazino-2-aminopurine modified base

Analyse RNA dodecamer with a 6-hydrazino-2-aminopurine modified base in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6XUS
Type: RNA
Length: 12 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA dodecamer with a 6-hydrazino-2-aminopurine modified base
Ligands: NA, MG

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA dodecamer with a 6-hydrazino-2-aminopurine modified base	rna	12	—	—

Ligands and binding sites

NA · Sodium ion · metal · 2 copies · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

6XUS · RNA dodecamer with a 6-hydrazino-2-aminopurine modified base · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6XUS · PDBe 6XUS

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