Research workbench
Crystal structure of glycyl radical enzyme ECL_02896 from enterobacter cloacae subsp. cloacae
Analyse Crystal structure of glycyl radical enzyme ECL_02896 from enterobacter cloacae… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6XS4
- Type
- protein
- Length
- 1,620 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Formate C-acetyltransferase
- UniProt
- A0A0H3CPF7
- Pockets
- 19 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Formate C-acetyltransferase | protein | 810 | 52% helix, 10% strand | A0A0H3CPF7 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 4 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
19 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1074 | 0.80 | 0.82 | 79 | PEG, EDO |
| 2 | 93 | 0.75 | 0.97 | 34 | empty |
| 3 | 169 | 0.68 | 0.88 | 35 | empty |
| 4 | 187 | 0.67 | 0.86 | 44 | EDO |
| 5 | 164 | 0.64 | 0.85 | 37 | empty |
Interfaces
1 interface between chains.
- A–B · 1322 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6XS4 · Crystal structure of glycyl radical enzyme ECL_02896 from Enterobacter cloacae subsp.… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3CPF7
- Elsewhere: RCSB PDB 6XS4 · PDBe 6XS4 · UniProt A0A0H3CPF7
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