Research workbench
Crystal structure of the mosquito protein AZ1 as an mbp fusion
Analyse Crystal structure of the mosquito protein AZ1 as an mbp fusion in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6XRX
- Type
- protein
- Length
- 551 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MALTOSE/MALTODEXTRIN-binding periplasmic protein, mosquito protein AZ1
- UniProt
- P0AEX9, Q8T5C5
- Ligands
- GLC, NA, CL
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MALTOSE/MALTODEXTRIN-binding periplasmic protein, mosquito protein AZ1 | protein | 551 | 55% helix, 14% strand | P0AEX9, Q8T5C5 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1076 | 0.72 | 0.75 | 61 | empty |
| 2 | 287 | 0.70 | 0.84 | 34 | GLC |
| 3 | 336 | 0.61 | 0.78 | 33 | empty |
Compared structures
- 6XRX · Crystal structure of the mosquito protein AZ1 as an MBP fusion · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEX9
- Every structure of UniProt Q8T5C5
- Elsewhere: RCSB PDB 6XRX · PDBe 6XRX · UniProt P0AEX9 · UniProt Q8T5C5
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