Research workbench
Solution structure of the pore forming toxin of entamoeba histolytica (amoebapore a)
Analyse Solution structure of the pore forming toxin of entamoeba histolytica… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1OF9
- Type
- protein
- Length
- 77 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pore-forming peptide ameobapore a
- UniProt
- P34095
- Pockets
- 1 · best druggability 0.71
Structure
solution nmr · 1 distinct chain · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pore-forming peptide ameobapore a | protein | 77 | 69% helix, 0% strand | P34095 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.71 | 0.92 | 23 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 1OF9 · Solution structure of the pore forming toxin of entamoeba histolytica (Amoebapore A) · the same entry in another collection · chain A against A, TM-score 1.00
- P34095 · AlphaFold monomer V2.0 prediction for pore-forming peptide ameobapore a (P34095) · a predicted model of the same protein · chain A against A, TM-score 0.74
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P34095
- Elsewhere: RCSB PDB 1OF9 · PDBe 1OF9 · UniProt P34095
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