Research workbench
Scoe with the caba substrate bound and alpha-ketoglutarate in an off- site
Analyse Scoe with the caba substrate bound and alpha-ketoglutarate in an off- site in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6XOJ
- Type
- protein
- Length
- 296 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Scoe protein
- UniProt
- A0A3B6UEU3
- Ligands
- 7UC, AKG, FE
- Pockets
- 2 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Scoe protein | protein | 296 | 22% helix, 26% strand | A0A3B6UEU3 |
Ligands and binding sites
- 7UC · (3~{R})-3-(2-hydroxy-2-oxoethylamino)butanoic acid · ligand · chains A
- AKG · 2-oxoglutaric acid · ligand · chains A
- FE · Fe (III) ion · metal · chains A
- ACT · Acetate ion · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 332 | 0.84 | 0.94 | 55 | 7UC, AKG, FE |
| 2 | 67 | 0.31 | 0.75 | 20 | empty |
Compared structures
- 6XOJ · ScoE with the CABA substrate bound and alpha-ketoglutarate in an off-site · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3B6UEU3
- Elsewhere: RCSB PDB 6XOJ · PDBe 6XOJ · UniProt A0A3B6UEU3
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