Research workbench
R. capsulatus cyt BC1 with both fes proteins in B position (CIII2 B-B)
Analyse R. capsulatus cyt BC1 with both fes proteins in B position (CIII2 B-B) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6XKV
- Type
- protein
- Length
- 1,678 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D5ANZ3, D5ANZ4, D5ANZ2
- Ligands
- HEC, FES
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, P | — | protein | 423 | — | D5ANZ3 |
| D, Q | — | protein | 235 | — | D5ANZ4 |
| E, R | — | protein | 181 | — | D5ANZ2 |
Ligands and binding sites
- HEC · Heme C · ligand · 6 copies · chains C, D, P, Q
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains E, R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XKV · R. capsulatus cyt bc1 with both FeS proteins in b position (CIII2 b-b) · the same entry in another collection · chain R against R, TM-score 1.00
- D5ANZ3 · AlphaFold monomer V2.0 prediction for cytochrome B (D5ANZ3) · a predicted model of the same protein · chain P against A, TM-score 0.97
- D5ANZ4 · AlphaFold monomer V2.0 prediction for cytochrome C1 (D5ANZ4) · a predicted model of the same protein · chain D against A, TM-score 0.97
- D5ANZ2 · AlphaFold monomer V2.0 prediction for ubiquinol-cytochrome C reductase iron-sulfur… · a predicted model of the same protein · chain E against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D5ANZ3
- Every structure of UniProt D5ANZ4
- Every structure of UniProt D5ANZ2
- Elsewhere: RCSB PDB 6XKV · PDBe 6XKV · UniProt D5ANZ3 · UniProt D5ANZ4 · UniProt D5ANZ2
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