Research workbench
Cryo-EM structure of octadecameric TF55 (beta-only) complex from S. solfataricus bound to ADP
Analyse Cryo-EM structure of octadecameric TF55 (beta-only) complex from S.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6XHI
- Type
- protein
- Length
- 473 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thermosome subunit beta
- UniProt
- Q9V2T8
- Ligands
- ADP
- Pockets
- 6 · best druggability 0.76
Structure
electron microscopy · 1 distinct chain · 53% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thermosome subunit beta | protein | 473 | 53% helix, 18% strand | Q9V2T8 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 807 | 0.76 | 0.80 | 67 | ADP |
| 2 | 404 | 0.72 | 0.83 | 62 | empty |
| 3 | 100 | 0.68 | 0.91 | 29 | empty |
| 4 | 278 | 0.52 | 0.75 | 38 | empty |
| 5 | 168 | 0.44 | 0.75 | 37 | empty |
Compared structures
- 6XHI · Cryo-EM structure of octadecameric TF55 (beta-only) complex from S. solfataricus bound to… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9V2T8 · AlphaFold monomer V2.0 prediction for thermosome subunit beta (Q9V2T8) · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9V2T8
- Elsewhere: RCSB PDB 6XHI · PDBe 6XHI · UniProt Q9V2T8
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