Research workbench
Pmtcd peptide exporter basket domain
Analyse Pmtcd peptide exporter basket domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6XFU
- Type
- protein
- Length
- 139 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ABC transporter ATP-binding protein
- UniProt
- X5EJW5
- Ligands
- SCN
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ABC transporter ATP-binding protein | protein | 70 | 33% helix, 31% strand | X5EJW5 |
| B | ABC transporter ATP-binding protein | protein | 69 | 38% helix, 29% strand | X5EJW5 |
Ligands and binding sites
- SCN · Thiocyanate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 736 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 6XFU · PmtCD peptide exporter basket domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt X5EJW5
- Elsewhere: RCSB PDB 6XFU · PDBe 6XFU · UniProt X5EJW5
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