Research workbench
SLP
Analyse SLP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6XF7
- Type
- protein
- Length
- 2,082 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lambda 1 protein
- UniProt
- A0A0E3JTF4
- Pockets
- 20 · best druggability 0.87
Structure
electron microscopy · 2 distinct chains · 36% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Lambda 1 protein | protein | 1031 | 37% helix, 16% strand | A0A0E3JTF4 |
| C | Lambda 1 protein | protein | 1051 | 35% helix, 16% strand | A0A0E3JTF4 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 767 | 0.87 | 0.89 | 101 | empty |
| 2 | 927 | 0.85 | 0.86 | 114 | empty |
| 3 | 955 | 0.84 | 0.85 | 125 | empty |
| 4 | 564 | 0.82 | 0.88 | 76 | empty |
| 5 | 874 | 0.82 | 0.84 | 93 | empty |
Interfaces
1 interface between chains.
- B–C · 1085 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 6XF7 · SLP · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0E3JTF4
- Elsewhere: RCSB PDB 6XF7 · PDBe 6XF7 · UniProt A0A0E3JTF4
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