Research workbench
Cdc-like protein
Analyse Cdc-like protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6XD4
- Type
- protein
- Length
- 458 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemolysin
- UniProt
- A0A1T3IZT7
- Ligands
- NA
- Pockets
- 4 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hemolysin | protein | 458 | 16% helix, 43% strand | A0A1T3IZT7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 310 | 0.60 | 0.78 | 43 | empty |
| 2 | 70 | 0.49 | 0.84 | 19 | ACT |
| 3 | 96 | 0.41 | 0.77 | 24 | empty |
| 4 | 77 | 0.36 | 0.76 | 15 | empty |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 6XD4 · CDC-like protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1T3IZT7
- Elsewhere: RCSB PDB 6XD4 · PDBe 6XD4 · UniProt A0A1T3IZT7
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