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Crystal structure of apo sznf from streptomyces achromogenes var. streptozoticus nrrl 2697

Analyse Crystal structure of apo sznf from streptomyces achromogenes var.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6XCV
Type: protein
Length: 916 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cupin domain-containing diiron protein
EC: 1.-.-.-
UniProt: A0A411MR89
Pockets: 8 · best druggability 0.82

Structure

x-ray diffraction · 2 distinct chains · 57% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cupin domain-containing diiron protein (EC 1.-.-.-)	protein	457	58% helix, 12% strand	A0A411MR89
B	Cupin domain-containing diiron protein (EC 1.-.-.-)	protein	459	56% helix, 12% strand	A0A411MR89

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	552	0.82	0.88	54	empty
2	495	0.82	0.88	49	empty
3	166	0.51	0.78	31	empty
4	131	0.47	0.78	25	empty
5	81	0.44	0.80	22	empty

Interfaces

1 interface between chains.

A–B · 3468 Å² buried · 50 hydrogen bonds · protein-protein

Compared structures

6XCV · Crystal structure of apo SznF from Streptomyces achromogenes var. streptozoticus NRRL 2697 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A411MR89
Elsewhere: RCSB PDB 6XCV · PDBe 6XCV · UniProt A0A411MR89

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