Research workbench
Structure of ndm-1 in complex with macrocycle inhibitor NDM1I-3D
Analyse Structure of ndm-1 in complex with macrocycle inhibitor NDM1I-3D in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6XCI
- Type
- protein
- Length
- 460 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- E9NWK5
- Ligands
- CD, ZN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 224 | — | E9NWK5 |
| A | — | protein | 228 | — | E9NWK5 |
| H | — | protein | 8 | — | — |
Ligands and binding sites
- CD · Cadmium ion · metal · 4 copies · chains B, A, H
- ZN · Zinc ion · metal · 2 copies · chains B, A, H
- ACT · Acetate ion · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XCI · Structure of NDM-1 in complex with macrocycle inhibitor NDM1i-3D · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E9NWK5
- Elsewhere: RCSB PDB 6XCI · PDBe 6XCI · UniProt E9NWK5
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