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Structure of the pr domain from PRDM3

Analyse Structure of the pr domain from PRDM3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6XAU
Type: protein
Length: 119 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Histone-lysine N-methyltransferase mecom
EC: 2.1.1.-
UniProt: P14404
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Histone-lysine N-methyltransferase mecom (EC 2.1.1.-)	protein	119	3% helix, 38% strand	P14404

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	57	0.35	0.78	16	empty

Compared structures

6XAU · Structure of the PR domain from PRDM3 · the same entry in another collection · chain A against A, TM-score 1.00
P14404 · AlphaFold monomer V2.0 prediction for histone-lysine N-methyltransferase mecom (P14404) · a predicted model of the same protein · chain A against A, TM-score 0.70

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P14404
Elsewhere: RCSB PDB 6XAU · PDBe 6XAU · UniProt P14404

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