Research workbench
Structure of a stable interstrand DNA crosslink involving an da amino group and an abasic site
Analyse Structure of a stable interstrand DNA crosslink involving an da amino group and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6XAH
- Type
- DNA
- Length
- 36 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'- D(*TP*AP*TP*GP*TP*CP*TP*AP*AP*GP*TP*TP*CP*AP*TP*CP*TP*A)-3'); DNA…
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'- D(*TP*AP*TP*GP*TP*CP*TP*AP*AP*GP*TP*TP*CP*AP*TP*CP*TP*A)-3') | dna | 18 | — | — |
| B | DNA (5'-D(*TP*AP*GP*AP*TP*GP*AP*AP*CP*(AAB) P*TP*AP*GP*AP*CP*AP*TP*A)-3') | dna | 18 | — | — |
Interfaces
1 interface between chains.
- A–B · 833 Ų buried · 65 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 6XAH · Structure of a Stable Interstrand DNA Crosslink Involving an dA Amino Group and an Abasic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6XAH · PDBe 6XAH
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