Research workbench
The structure of PF6R from the filamentous phage PF6 of pseudomonas aeruginosa PA01
Analyse The structure of PF6R from the filamentous phage PF6 of pseudomonas aeruginosa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6X6F
- Type
- protein
- Length
- 488 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PF6R
- Ligands
- NO3
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 68% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, F, H | PF6R | protein | 84 | 71% helix, 4% strand | — |
| C, D | PF6R | protein | 76 | 64% helix, 4% strand | — |
Ligands and binding sites
- NO3 · Nitrate ion · ion · 3 copies · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.45 | 0.76 | 20 | empty |
Interfaces
6 interfaces between chains.
- A–B · 977 Ų buried · 7 hydrogen bonds · protein-protein
- F–H · 972 Ų buried · 7 hydrogen bonds · protein-protein
- C–D · 969 Ų buried · 4 hydrogen bonds · protein-protein
- A–D · 361 Ų buried · 11 hydrogen bonds · protein-protein
- C–H · 207 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6X6F · The structure of Pf6r from the filamentous phage Pf6 of Pseudomonas aeruginosa PA01 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6X6F · PDBe 6X6F
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