Research workbench
PDZ domain from choanoflagellate SHANK1 (MBSHANK1) bound to GIRK3 peptide
Analyse PDZ domain from choanoflagellate SHANK1 (MBSHANK1) bound to GIRK3 peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6X23
- Type
- protein
- Length
- 96 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MBSHANK1 protein; G protein-activated inward rectifier potassium channel 3
- UniProt
- A9V7E4, Q92806
Structure
x-ray diffraction · 2 distinct chains · 16% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MBSHANK1 protein | protein | 89 | 17% helix, 38% strand | A9V7E4 |
| B | G protein-activated inward rectifier potassium channel 3 | protein | 7 | 0% helix, 43% strand | Q92806 |
Interfaces
1 interface between chains.
- A–B · 548 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 6X23 · PDZ domain from choanoflagellate SHANK1 (mbSHANK1) bound to GIRK3 peptide · the same entry in another collection · chain A against A, TM-score 1.00
- Q92806 · AlphaFold monomer V2.0 prediction for G protein-activated inward rectifier potassium… · a predicted model of the same protein · chain B against A, TM-score 0.55
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9V7E4
- Every structure of UniProt Q92806
- Elsewhere: RCSB PDB 6X23 · PDBe 6X23 · UniProt A9V7E4 · UniProt Q92806
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