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Two-component D3 assembly constructed by fusing symmetric oligomers to coiled coils

Analyse Two-component D3 assembly constructed by fusing symmetric oligomers to coiled… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6X1I
Type: protein
Length: 317 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: COB_ADENO_TRANS domain-containing protein PH0671 fused to a coiled coil; Snoal-like…
UniProt: O58404, Q7D0S4
Pockets: 1 · best druggability 0.59

Structure

x-ray diffraction · 2 distinct chains · 66% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	COB_ADENO_TRANS domain-containing protein PH0671 fused to a coiled coil	protein	171	82% helix, 0% strand	O58404
B	Snoal-like protein fused to a coiled coil	protein	146	48% helix, 35% strand	Q7D0S4

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	213	0.59	0.80	27	empty

Interfaces

1 interface between chains.

A–B · 714 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

6X1I · Two-Component D3 Assembly Constructed by Fusing Symmetric Oligomers to Coiled Coils · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O58404
Every structure of UniProt Q7D0S4
Elsewhere: RCSB PDB 6X1I · PDBe 6X1I · UniProt O58404 · UniProt Q7D0S4

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