Research workbench
A circular permutant of the tobacco mosaic virus (tmv) mutant Q101H
Analyse A circular permutant of the tobacco mosaic virus (tmv) mutant Q101H in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6X0R
- Type
- protein
- Length
- 2,380 residues
- Chains
- 17
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein circular permutant
- UniProt
- P69687
- Pockets
- 16 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q | Capsid protein circular permutant | protein | 140 | 49% helix, 10% strand | P69687 |
Pockets
16 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.32 | 0.74 | 17 | empty |
| 2 | 91 | 0.32 | 0.73 | 17 | empty |
| 3 | 69 | 0.32 | 0.75 | 18 | empty |
| 4 | 83 | 0.32 | 0.73 | 18 | empty |
| 5 | 78 | 0.32 | 0.74 | 17 | empty |
Interfaces
17 interfaces between chains.
- J–K · 1173 Ų buried · 16 hydrogen bonds · protein-protein
- M–P · 1170 Ų buried · 13 hydrogen bonds · protein-protein
- D–Q · 1168 Ų buried · 13 hydrogen bonds · protein-protein
- M–O · 1168 Ų buried · 13 hydrogen bonds · protein-protein
- B–F · 1165 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6X0R · A Circular Permutant of the Tobacco Mosaic Virus (TMV) mutant Q101H · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69687
- Elsewhere: RCSB PDB 6X0R · PDBe 6X0R · UniProt P69687
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