Research workbench
Structure of the laindy-alpha-ketoglutarate complex
Analyse Structure of the laindy-alpha-ketoglutarate complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WU4
- Type
- protein
- Length
- 978 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dass family sodium-coupled anion symporter
- UniProt
- A0A3A9Y7Q2
- Pockets
- 11 · best druggability 0.78
Structure
electron microscopy · 1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Dass family sodium-coupled anion symporter | protein | 489 | 72% helix, 0% strand | A0A3A9Y7Q2 |
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1080 | 0.78 | 0.80 | 127 | empty |
| 2 | 115 | 0.61 | 0.86 | 19 | empty |
| 3 | 108 | 0.60 | 0.86 | 18 | empty |
| 4 | 339 | 0.59 | 0.77 | 42 | empty |
| 5 | 328 | 0.59 | 0.77 | 42 | empty |
Interfaces
1 interface between chains.
- A–B · 2878 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6WU4 · Structure of the LaINDY-alpha-ketoglutarate complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3A9Y7Q2
- Elsewhere: RCSB PDB 6WU4 · PDBe 6WU4 · UniProt A0A3A9Y7Q2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.