Research workbench
Structure of vcindy-na+ in amphipol
Analyse Structure of vcindy-na+ in amphipol in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WU3
- Type
- protein
- Length
- 890 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vcindy
- Pockets
- 11 · best druggability 0.79
Structure
electron microscopy · 1 distinct chain · 73% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Vcindy | protein | 445 | 73% helix, 0% strand | — |
Pockets
11 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.79 | 0.99 | 16 | empty |
| 2 | 415 | 0.68 | 0.80 | 52 | empty |
| 3 | 409 | 0.66 | 0.79 | 48 | empty |
| 4 | 242 | 0.56 | 0.77 | 31 | empty |
| 5 | 274 | 0.55 | 0.75 | 27 | empty |
Interfaces
1 interface between chains.
- A–C · 2152 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 6WU3 · Structure of VcINDY-Na+ in amphipol · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6WU3 · PDBe 6WU3
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