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Structure of laindy crystallized in the presence of alpha- ketoglutarate and malate

Analyse Structure of laindy crystallized in the presence of alpha- ketoglutarate and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6WTW
Type: protein
Length: 978 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dass family sodium-coupled anion symporter
UniProt: A0A3A9Y7Q2
Pockets: 10 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 73% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Dass family sodium-coupled anion symporter	protein	489	73% helix, 1% strand	A0A3A9Y7Q2

Pockets

10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1099	0.77	0.79	136	empty
2	108	0.61	0.86	23	empty
3	343	0.60	0.77	34	empty
4	182	0.59	0.81	19	empty
5	373	0.57	0.75	40	empty

Interfaces

1 interface between chains.

A–B · 2714 Å² buried · 16 hydrogen bonds · protein-protein

Compared structures

6WTW · Structure of LaINDY crystallized in the presence of alpha-ketoglutarate and malate · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A3A9Y7Q2
Elsewhere: RCSB PDB 6WTW · PDBe 6WTW · UniProt A0A3A9Y7Q2

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