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Structure of a sting-associated cdne C-di-gmp synthase from flavobacteriaceae sp.
Analyse Structure of a sting-associated cdne C-di-gmp synthase from flavobacteriaceae… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WT8
- Type
- protein
- Length
- 356 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sting-associated cdne C-di-gmp synthase
- Pockets
- 4 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sting-associated cdne C-di-gmp synthase | protein | 356 | 56% helix, 13% strand | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 406 | 0.62 | 0.77 | 40 | empty |
| 2 | 192 | 0.48 | 0.76 | 26 | empty |
| 3 | 72 | 0.40 | 0.79 | 15 | empty |
| 4 | 53 | 0.33 | 0.77 | 14 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 6WT8 · Structure of a STING-associated CdnE c-di-GMP synthase from Flavobacteriaceae sp. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6WT8 · PDBe 6WT8
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