Research workbench
Tetrahymena ribozyme models, 6.8 ångström resolution
Analyse Tetrahymena ribozyme models, 6.8 ångström resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WLS
- Type
- RNA
- Length
- 388 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (388-mer)
- Pockets
- 15 · best druggability 0.76
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (388-mer) | rna | 388 | — | — |
Pockets
15 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1151 | 0.76 | 0.79 | 54 | empty |
| 2 | 87 | 0.67 | 0.93 | 12 | empty |
| 3 | 715 | 0.64 | 0.75 | 36 | empty |
| 4 | 315 | 0.61 | 0.79 | 20 | empty |
| 5 | 504 | 0.59 | 0.75 | 29 | empty |
Compared structures
- 6WLS · Tetrahymena ribozyme models, 6.8 Angstrom resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6WLS · PDBe 6WLS
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