Research workbench
SAM-IV riboswitch with SAM models, 4.8 ångström resolution
Analyse SAM-IV riboswitch with SAM models, 4.8 ångström resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WLR
- Type
- RNA
- Length
- 119 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (119-mer)
- Pockets
- 3 · best druggability 0.77
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (119-mer) | rna | 119 | — | — |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1061 | 0.77 | 0.80 | 53 | empty |
| 2 | 349 | 0.50 | 0.73 | 25 | empty |
| 3 | 134 | 0.40 | 0.75 | 14 | empty |
Compared structures
- 6WLR · SAM-IV riboswitch with SAM models, 4.8 Angstrom resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6WLR · PDBe 6WLR
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