Research workbench
Apo SAM-IV riboswitch models, 4.7 ångström resolution
Analyse Apo SAM-IV riboswitch models, 4.7 ångström resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WLQ
- Type
- RNA
- Length
- 119 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (119-mer)
- Pockets
- 4 · best druggability 0.73
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (119-mer) | rna | 119 | — | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1139 | 0.73 | 0.77 | 50 | empty |
| 2 | 187 | 0.44 | 0.75 | 15 | empty |
| 3 | 242 | 0.43 | 0.72 | 20 | empty |
| 4 | 54 | 0.25 | 0.73 | 9 | empty |
Compared structures
- 6WLQ · Apo SAM-IV riboswitch models, 4.7 Angstrom resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6WLQ · PDBe 6WLQ
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