Research workbench
F. nucleatum glycine riboswitch with glycine models, 7.4 ångström resolution
Analyse F. nucleatum glycine riboswitch with glycine models, 7.4 ångström resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WLM
- Type
- RNA
- Length
- 171 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (171-mer)
- Pockets
- 9 · best druggability 0.69
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (171-mer) | rna | 171 | — | — |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 720 | 0.69 | 0.78 | 45 | empty |
| 2 | 324 | 0.55 | 0.76 | 19 | empty |
| 3 | 71 | 0.51 | 0.87 | 13 | empty |
| 4 | 63 | 0.43 | 0.83 | 14 | empty |
| 5 | 236 | 0.43 | 0.72 | 21 | empty |
Compared structures
- 6WLM · F. nucleatum glycine riboswitch with glycine models, 7.4 Angstrom resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6WLM · PDBe 6WLM
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