Research workbench
Apo F. nucleatum glycine riboswitch models, 10.0 ångström resolution
Analyse Apo F. nucleatum glycine riboswitch models, 10.0 ångström resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WLL
- Type
- RNA
- Length
- 171 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (171-mer)
- Pockets
- 7 · best druggability 0.65
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (171-mer) | rna | 171 | — | — |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 762 | 0.65 | 0.75 | 43 | empty |
| 2 | 426 | 0.59 | 0.76 | 23 | empty |
| 3 | 223 | 0.47 | 0.75 | 17 | empty |
| 4 | 232 | 0.44 | 0.73 | 18 | empty |
| 5 | 58 | 0.44 | 0.84 | 13 | empty |
Compared structures
- 6WLL · Apo F. nucleatum glycine riboswitch models, 10.0 Angstrom resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6WLL · PDBe 6WLL
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