Research workbench
Phage G GP27 major capsid proteins and GP26 decoration proteins
Analyse Phage G GP27 major capsid proteins and GP26 decoration proteins in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WKK
- Type
- protein
- Length
- 4,380 residues
- Chains
- 24
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GP27 major capsid protein; GP26 capsid decoration protein
- UniProt
- G3MB97, G3MB96
- Pockets
- 20 · best druggability 0.69
Structure
electron microscopy · 2 distinct chains · 16% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | GP27 major capsid protein | protein | 280 | 25% helix, 26% strand | G3MB97 |
| G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X | GP26 capsid decoration protein | protein | 150 | 0% helix, 18% strand | G3MB96 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.69 | 0.97 | 18 | empty |
| 2 | 256 | 0.66 | 0.83 | 25 | empty |
| 3 | 374 | 0.62 | 0.77 | 49 | empty |
| 4 | 490 | 0.61 | 0.74 | 51 | empty |
| 5 | 398 | 0.59 | 0.75 | 44 | empty |
Interfaces
67 interfaces between chains.
- B–C · 3430 Ų buried · 42 hydrogen bonds · protein-protein
- A–F · 3291 Ų buried · 44 hydrogen bonds · protein-protein
- E–F · 3189 Ų buried · 28 hydrogen bonds · protein-protein
- A–B · 3175 Ų buried · 36 hydrogen bonds · protein-protein
- C–D · 3087 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 6WKK · Phage G gp27 major capsid proteins and gp26 decoration proteins · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G3MB97
- Every structure of UniProt G3MB96
- Elsewhere: RCSB PDB 6WKK · PDBe 6WKK · UniProt G3MB97 · UniProt G3MB96
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