Research workbench
Crystal structure of laccase from thermus thermophilus HB27 with an open conformation of beta-hairpin (average deposited dose 10.33 mgy)
Analyse Crystal structure of laccase from thermus thermophilus HB27 with an open… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WCG
- Type
- protein
- Length
- 440 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Laccase
- EC
- 1.10.3.2
- UniProt
- Q72HW2
- Ligands
- CU
- Pockets
- 4 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Laccase (EC 1.10.3.2) | protein | 440 | 6% helix, 46% strand | Q72HW2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 255 | 0.59 | 0.79 | 26 | 1PE |
| 2 | 172 | 0.49 | 0.77 | 27 | empty |
| 3 | 96 | 0.37 | 0.76 | 22 | empty |
| 4 | 62 | 0.30 | 0.74 | 17 | empty |
Compared structures
- 6WCG · Crystal structure of Laccase from Thermus thermophilus HB27 with an open conformation of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72HW2
- Elsewhere: RCSB PDB 6WCG · PDBe 6WCG · UniProt Q72HW2
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