Research workbench
Atomic-resolution structure of HIV-1 capsid tubes by magic angle spinning NMR
Analyse Atomic-resolution structure of HIV-1 capsid tubes by magic angle spinning NMR in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WAP
- Type
- protein
- Length
- 231 residues
- Chains
- 1
- Method
- solid-state nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 capsid protein
- UniProt
- P12493
- Pockets
- 2 · best druggability 0.39
Structure
solid-state nmr · 1 distinct chain · 61% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HIV-1 capsid protein | protein | 231 | 61% helix, 2% strand | P12493 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.39 | 0.80 | 13 | empty |
| 2 | 51 | 0.29 | 0.75 | 16 | empty |
Compared structures
- 6WAP · Atomic-Resolution Structure of HIV-1 Capsid Tubes by Magic Angle Spinning NMR · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12493
- Elsewhere: RCSB PDB 6WAP · PDBe 6WAP · UniProt P12493
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